SNP Profiles of SPEC 160/9 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
1._RUQ_51	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
2._RUQ_51	_	_	AC	GT	CT	AC	CG	AG	CT	AT	_	CC	CT	CC
3._SPEC_160_/9	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
4._SPEC_160_/9	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
5._SPEC_160_/9	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
6._SPEC_160_/9	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
7._SPEC_160_/9	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
8._GC-08-267-8-39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
9._GC-08-267-8-39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
10._GC-08-267-8-39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
11._GC-08-267-8-39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
12._GC-08-267-8-39	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	CC	CT	CC
13._RUQ_51	_	_	AC	_	_	_	_	AG	_	_	_	AC	_	CC
14._RUQ_51	GG	AT	AC	AC	AG	AC	CG	AG	AG	AT	GG	CC	_	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CC	AG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
1._RUQ_51	AC	CC	AG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
2._RUQ_51	AA	CC	_	GT	CG	CC	_	_	_	_	_	_	GG	_
3._SPEC_160_/9	AC	CC	GG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
4._SPEC_160_/9	AC	CC	GG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
5._SPEC_160_/9	AC	CC	GG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
6._SPEC_160_/9	AC	CC	GG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
7._SPEC_160_/9	AC	CC	GG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
8._GC-08-267-8-39	AC	CC	GG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
9._GC-08-267-8-39	AC	CC	GG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
10._GC-08-267-8-39	AC	CC	GG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
11._GC-08-267-8-39	AC	CC	GG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
12._GC-08-267-8-39	AC	CC	GG	GT	CG	CC	TT	GG	CC	AA	AA	CT	GG	CC
13._RUQ_51	AC	_	AG	GT	CG	_	_	_	_	AA	_	_	GG	_
14._RUQ_51	AC	GG	_	AC	CG	GG	AA	GG	GG	AA	AA	_	_	GG

	29	30	31	32	33
_Input profile	AA	TT	CT	GG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_51	AA	TT	CT	_	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_51	_	_	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._SPEC_160_/9	AA	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._SPEC_160_/9	AA	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._SPEC_160_/9	AA	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._SPEC_160_/9	AA	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._SPEC_160_/9	AA	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-08-267-8-39	AA	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-08-267-8-39	AA	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-08-267-8-39	AA	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-08-267-8-39	AA	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-08-267-8-39	AA	TT	CT	CG	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._RUQ_51	_	_	_	CG	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._RUQ_51	AA	AA	AG	CC	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: SPEC_160_/9

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña, Lot 8, Row 24 4_6

Dapeng Zhang, 2016

1._SPEC_160_/9 RUQ_51

96.9 %
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._SPEC_160_/9 RUQ_51

95 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._SPEC_160_/9

93.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._SPEC_160_/9

93.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 2

Dapeng Zhang, 2016

5._SPEC_160_/9

93.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 3

Dapeng Zhang, 2016

6._SPEC_160_/9

93.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 4

Dapeng Zhang, 2016

7._SPEC_160_/9

93.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8839 5

Dapeng Zhang, 2016

8._SPEC_160_/9 GC-08-267-8-39

93.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._SPEC_160_/9 GC-08-267-8-39

93.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._SPEC_160_/9 GC-08-267-8-39

93.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

11._SPEC_160_/9 GC-08-267-8-39

93.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._SPEC_160_/9 GC-08-267-8-39

93.9 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

13._SPEC_160_/9 RUQ_51

81.8 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

14._SPEC_160_/9 RUQ_51

55.2 %
29 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP529	13	TcSNP534	14	TcSNP577	15	TcSNP591
16	TcSNP619	17	TcSNP645	18	TcSNP723	19	TcSNP872	20	TcSNP891
21	TcSNP917	22	TcSNP929	23	TcSNP994	24	TcSNP1062	25	TcSNP1075
26	TcSNP1165	27	TcSNP1253	28	TcSNP1270	29	TcSNP1350	30	TcSNP1414
31	TcSNP1442	32	TcSNP1458	33	TcSNP1484